ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR472
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCTACTCCTCCCATACC miRNA* AGTGGGATGGGTGGAAAGA mismatches: 4 bulges: 1 |
pre-miRNA
GGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES| miRBase ghr-MIR482a: 4e-43 PMRD ghr-miR482a: 4e-43 microPC miR482: 6e-39 | UniProt no hits RFAM no hits |
Identical with: miR482 from microPC (MNEST045290) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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