ABOUT THIS RECORDspecies: Triphysaria pusilla
source: microPC, original name: miR171
Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCAT miRNA* GATGTTGGAACGGCTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
ATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCAT
dot-bracket secondary structure
((((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCAT
dot-bracket secondary structure
((((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))
SIMILARITIES| miRBase vvi-MIR171i: 4e-21 PMRD vvi-miR171i: 4e-21 microPC miR171: 1e-39 | UniProt no hits RFAM MIR171_1: 8e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
