ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR319
source: microPC, original name: miR319
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCTT miRNA* GAGAGCTTCCTTCACCCACTC mismatches: 2 bulges: 2 |
pre-miRNA
TAAGAGAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCT
ACTGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTCCTT
dot-bracket secondary structure
)(((.((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))
)))))).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..)))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAAGAGAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCT
ACTGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTCCTT
dot-bracket secondary structure
)(((.((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))
)))))).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..)))))))))))))))
SIMILARITIES| miRBase ptc-MIR319f: 1.0E-20 PMRD ptc-miR319f: 1.0E-20 microPC miR319: 7.0E-96 | UniProt no hits RFAM 9MIR159: 2.0E-19 |
Identical with: miR159 from microPC (MNEST045367) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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