ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR394
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGCGGCCAGTATGTCAA mismatches: 4 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTCTTTGAAGTAATGGAGGCGGCCAGTATGTCAA
dot-bracket secondary structure
.((((((.(((.((.(((((((.....((((((....................................))))))))))))).)).))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTCTTTGAAGTAATGGAGGCGGCCAGTATGTCAA
dot-bracket secondary structure
.((((((.(((.((.(((((((.....((((((....................................))))))))))))).)).))).)))))).
SIMILARITIES| miRBase ghr-MIR394b: 3e-50 PMRD ghr-miR394: 8e-48 microPC miR394: 0.00007 | UniProt no hits RFAM MIR394: 0.00008 |
Identical with: ghr-MIR394b from miRBase (MNEST041056) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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