ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTCTCTCTATGTC mismatches: 2 bulges: 1 |
pre-miRNA
GACAGAAGAGAGTGAGCACACAAAGGGGGAATTGTATAAAATTAAGTTTGTTGTATATAGTTGCTTTTGCGTGCTCACTCTCTCTATGTC
dot-bracket secondary structure
((((..(((((((((((((.((((((...(((((((((.(((.......))).))))))))).)))))).)))))))))))))...))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACACAAAGGGGGAATTGTATAAAATTAAGTTTGTTGTATATAGTTGCTTTTGCGTGCTCACTCTCTCTATGTC
dot-bracket secondary structure
((((..(((((((((((((.((((((...(((((((((.(((.......))).))))))))).)))))).)))))))))))))...))))
SIMILARITIES| miRBase ath-MIR156d: 5e-18 PMRD ath-miRf10567-akr: 5e-18 microPC miR156: 4e-46 | UniProt no hits RFAM mir-156: 9e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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