ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TTGACAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGGTTTAGAACTTTAGAGA
GAGACATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...((((((((((.....))))))))))
))))....................))))).)))...)))))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TTGACAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGGTTTAGAACTTTAGAGA
GAGACATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...((((((((((.....))))))))))
))))....................))))).)))...)))))))))))))))).)))))))))
SIMILARITIES| miRBase ptc-MIR156j: 0.00000000000004 PMRD ptc-miRf10223-akr: 0.00000000000004 microPC miR157: 4e-88 | UniProt no hits RFAM no hits |
Identical with: miR156 from microPC (MNEST045352) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
