ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR166
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGACCGGG mismatches: 3 bulges: 0 |
pre-miRNA
CGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTTTGTA
ATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
)(((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........)
))))))))..)...))).)))))).)))).))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTTTGTA
ATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
)(((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........)
))))))))..)...))).)))))).)))).))))))..)))))))
SIMILARITIES| miRBase ghr-MIR166b: 1.0E-78 PMRD ghr-miR166b: 1.0E-78 microPC miR166: 2.0E-9 | UniProt no hits RFAM 6mir-166: 1.0E-7 |
Identical with: ghr-MIR166b from miRBase (MNEST041048), ghr-miR166b from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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