ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR166
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGACCGGG mismatches: 3 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTTTGTA
ATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........)
))))))))..)...))).)))))).)))).))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTTTGTA
ATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........)
))))))))..)...))).)))))).)))).))))))..)))))))
SIMILARITIES| miRBase ghr-MIR166b: 1e-78 PMRD ghr-miR166b: 1e-78 microPC miR166: 0.000000002 | UniProt no hits RFAM mir-166: 0.0000001 |
Identical with: ghr-MIR166b from miRBase (MNEST041048) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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