ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR482
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGT mismatches: 2 bulges: 1 |
pre-miRNA
GGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCCTCCCTACTCCTCCCATTCC
dot-bracket secondary structure
((.((((.(((((((((...((((..((....((((((...............))))))...))))))..))))).)))).)))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCCTCCCTACTCCTCCCATTCC
dot-bracket secondary structure
((.((((.(((((((((...((((..((....((((((...............))))))...))))))..))))).)))).)))).))
SIMILARITIES| miRBase pta-MIR482d: 7e-45 PMRD pta-miR482d: 7e-45 microPC miR482: 7e-45 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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