ABOUT THIS RECORDspecies: Populus tremula
source: microPC, original name: miR476
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTAATCCTTCTTTGCAAA miRNA* TGCTAAGATAGATTTACTA mismatches: 3 bulges: 1 |
pre-miRNA
TAGTAATCCTTCTTTGCAAAGTCATTTATTATTTTTCCTTTAATTACTATAATCAATGACTTTGCTAAGATAGATTTACTA
dot-bracket secondary structure
((((((((..((((.(((((((((((.(((((................))))).))))))))))).))))..)).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGTAATCCTTCTTTGCAAAGTCATTTATTATTTTTCCTTTAATTACTATAATCAATGACTTTGCTAAGATAGATTTACTA
dot-bracket secondary structure
((((((((..((((.(((((((((((.(((((................))))).))))))))))).))))..)).))))))
SIMILARITIES| miRBase ptc-MIR476a: 5e-36 PMRD ptc-miR476a: 5e-36 microPC miR476: 9e-41 | UniProt no hits RFAM MIR476: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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