ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).))))))).)))).)))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).))))))).)))).)))).))).
SIMILARITIES| miRBase ath-MIR162b: 0.000000000001 PMRD ath-miRf10254-akr: 0.000000000001 microPC miR162: 5e-49 | UniProt no hits RFAM MIR162_2: 0.00000000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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