ABOUT THIS RECORDspecies: Helianthus exilis
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGTTCGGTTCAATAAGA mismatches: 2 bulges: 0 |
pre-miRNA
TATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
)((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
)((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))
SIMILARITIES| miRBase rco-MIR171a: 1.0E-8 PMRD vvi-miR171c: 9.0E-7 microPC miR171: 5.0E-39 | UniProt no hits RFAM 1MIR171_1: 3.0E-7 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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