ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR399
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCT miRNA* GACTACTTTCTATTGGCATA mismatches: 3 bulges: 0 |
pre-miRNA
AGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAAAGGAGAGTTGCCCT
dot-bracket secondary structure
(((.(.(((((((.((((((((((....(((.((..((((((...))))))..)).)))....)))))))))).))))))).).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAAAGGAGAGTTGCCCT
dot-bracket secondary structure
(((.(.(((((((.((((((((((....(((.((..((((((...))))))..)).)))....)))))))))).))))))).).)))
SIMILARITIES| miRBase csi-MIR399d: 0.0000003 PMRD vvi-miR399c: 0.00002 microPC miR399: 3e-44 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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