ABOUT THIS RECORDspecies: Populus trichocarpa
source: microPC, original name: miR482
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTACTCCTCCCATTCC miRNA* AGATGGGAGAGTATGCA mismatches: 1 bulges: 2 |
pre-miRNA
GGAGATGGGAGAGTATGCAAGAAGGAAAAAATCATGATTTAATATCCCTTCTTGCCTACTCCTCCCATTCC
dot-bracket secondary structure
((((.((((((((((.(((((((((.....................))))))))).)))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAGATGGGAGAGTATGCAAGAAGGAAAAAATCATGATTTAATATCCCTTCTTGCCTACTCCTCCCATTCC
dot-bracket secondary structure
((((.((((((((((.(((((((((.....................))))))))).)))).))))))))))
SIMILARITIES| miRBase ptc-MIR482: 1e-27 PMRD no hits microPC miR482: 7e-35 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
