ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCCGTCA mismatches: 2 bulges: 1 |
pre-miRNA
ATGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTCA
ATTCATTTGTGCTCTCTATGCTTCCGTCA
dot-bracket secondary structure
).(((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........)))).
..))))))))))))))))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTCA
ATTCATTTGTGCTCTCTATGCTTCCGTCA
dot-bracket secondary structure
).(((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........)))).
..))))))))))))))))).)))).))).
SIMILARITIES| miRBase sly-MIR156a: 3.0E-14 PMRD nta-miR157: 3.0E-69 microPC miR157: 3.0E-69 | UniProt no hits RFAM no hits |
Identical with: miR156 from microPC (MNEST045877), nta-miR157 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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