ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGGCGAGCTGGGAACACACG mismatches: 1 bulges: 0 |
pre-miRNA
CAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
CAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))
SIMILARITIES| miRBase osa-MIR398b: 4e-33 PMRD osa-miR398b: 4e-33 microPC miR398: 7e-32 | UniProt no hits RFAM MIR398: 7e-32 |
Identical with: osa-MIR398b from miRBase (MNEST042040) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
