ABOUT THIS RECORDspecies: Populus tremula
source: microPC, original name: miR169
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCC miRNA* CAAGTGTCCTTGGCT mismatches: 1 bulges: 1 |
pre-miRNA
AGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGC
GCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCT
dot-bracket secondary structure
((((((((((.((((((.(((((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((..
.(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGC
GCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCT
dot-bracket secondary structure
((((((((((.((((((.(((((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((..
.(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))))))))))))))))))
SIMILARITIES| miRBase ptc-MIR169k: 3e-64 PMRD ptc-miR169k: 3e-64 microPC miR169: 5e-103 | UniProt no hits RFAM MIR169_2: 6e-63 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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