ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
source: microPC, original name: miR171
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGAACGGTTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
ATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
(((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
(((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))
SIMILARITIES| miRBase rco-MIR171e: 0.0000000000009 PMRD vvi-miR171i: 0.00000000001 microPC miR171: 5e-36 | UniProt no hits RFAM MIR171_1: 0.000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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