ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR319
source: microPC, original name: miR319
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCC miRNA* AGCTTCCTTCACCCACTCA mismatches: 4 bulges: 1 |
pre-miRNA
CGAGAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCTAC
TGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
)..((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))))
)))).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGAGAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCTAC
TGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
)..((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))))
)))).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..)))))))))))).
SIMILARITIES| miRBase ptc-MIR319f: 6.0E-19 PMRD ptc-miR319f: 6.0E-19 microPC miR319: 1.0E-94 | UniProt no hits RFAM 9MIR159: 1.0E-17 |
Identical with: miR159 from microPC (MNEST045367) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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