ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR168
source: microPC, original name: miR168
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGA mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
(((((((((((((..(((((.(((...((((.....)))).))).)))))..)))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
(((((((((((((..(((((.(((...((((.....)))).))).)))))..)))))))))))))
SIMILARITIES| miRBase zma-MIR168a: 2e-31 PMRD zma-miR168m: 2e-31 microPC miR168: 2e-31 | UniProt no hits RFAM MIR168: 4e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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