ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR949
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGGAATCCAATGCGC miRNA* GTATTGATTTCCGGG mismatches: 1 bulges: 1 |
pre-miRNA
TCCGGGAATCCAATGCGCNTTCTTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGG
dot-bracket secondary structure
.(((((((((.(((((((.((((((((((((((.(((((.(((((.....))))))))))..)))))))))))))).)))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
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TCCGGGAATCCAATGCGCNTTCTTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGG
dot-bracket secondary structure
.(((((((((.(((((((.((((((((((((((.(((((.(((((.....))))))))))..)))))))))))))).)))))))))))))))).
SIMILARITIES| miRBase pta-MIR949: 3e-44 PMRD pta-miR949: 3e-44 microPC miR949: 3e-44 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
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