ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR951
source: microPC, original name: miR951
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTCTTGACGTCTGGACCAC miRNA* GGTTCAGTCATCAAGAACA mismatches: 4 bulges: 0 |
pre-miRNA
TGTTCTTGACGTCTGGACCACGAGGGTTTGCTTTACGTTGGGCATGAAGAAACAATCATCTACCGCGGTTCAGTCATCAAGAACA
dot-bracket secondary structure
.((((((((.(.(((((((.((......(((((......)))))...(((........)))..)).))))))).).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGTTCTTGACGTCTGGACCACGAGGGTTTGCTTTACGTTGGGCATGAAGAAACAATCATCTACCGCGGTTCAGTCATCAAGAACA
dot-bracket secondary structure
.((((((((.(.(((((((.((......(((((......)))))...(((........)))..)).))))))).).)))))))).
SIMILARITIES| miRBase pta-MIR951: 4e-43 PMRD pta-miR951: 4e-43 microPC miR951: 4e-43 | UniProt no hits RFAM no hits |
Identical with: pta-MIR951 from miRBase (MNEST039441) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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