ABOUT THIS RECORDspecies: Helianthus exilis
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCA miRNA* ATGTTGGTTCGGTTCAATA mismatches: 2 bulges: 0 |
pre-miRNA
AGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
)(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
)(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).
SIMILARITIES| miRBase rco-MIR171a: 1.0E-9 PMRD vvi-miR171c: 6.0E-8 microPC miR171: 9.0E-41 | UniProt no hits RFAM 1MIR171_1: 2.0E-8 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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