ABOUT THIS RECORDspecies: Citrus clementina
source: microPC, original name: miR167
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTGCCAGCATGATCT miRNA* ATCATCTGGCAGTTT mismatches: 0 bulges: 1 |
pre-miRNA
AAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTT
dot-bracket secondary structure
((((((((((.((((((((..((((((((((........)).))))))))..))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTT
dot-bracket secondary structure
((((((((((.((((((((..((((((((((........)).))))))))..))))))))))))))))))
SIMILARITIES| miRBase ctr-MIR167: 3e-34 PMRD cle-miR167: 3e-34 microPC miR167: 3e-34 | UniProt no hits RFAM MIR167_1: 0.00000001 |
Identical with: ccl-MIR167a from miRBase (MNEST041208) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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