ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR1444
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCATATTCGGTCAACGTTC miRNA* ATATTGATCGAATATGTATG mismatches: 3 bulges: 0 |
pre-miRNA
GAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCATATTCGGTCAACGTTC
dot-bracket secondary structure
(((..(((((((((((((.((((((((((.......)))))))))).)))))))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCATATTCGGTCAACGTTC
dot-bracket secondary structure
(((..(((((((((((((.((((((((((.......)))))))))).)))))))))))))..)))
SIMILARITIES| miRBase ptc-MIR1444b: 6e-29 PMRD ptc-miR1444b: 6e-29 microPC miR1444: 6e-29 | UniProt no hits RFAM MIR1444: 1e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
