miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST046450
species:
Populus tremula
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTGAAGTCCAATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTGAAGTCCAATA
GAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCTGC
GGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTT
TTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((..(((((((.(
((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).))).
))....)))).))))).)))))..)))))))..)).))).))))).
)))))))..)))))))))
SIMILARITIES
miRBase
ptc-MIR159b
:
7e-68
PMRD
ptc-miR159b
:
7e-68
microPC
miR159
:
2e-77
UniProt
no hits
RFAM
MIR159: 1e-66
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record