ABOUT THIS RECORDspecies: Curcuma longa
source: microPC, original name: miR167
Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCT miRNA* ATCATTATGGCAGTTTCA mismatches: 3 bulges: 0 |
pre-miRNA
ATGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGT
ATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCA
dot-bracket secondary structure
).((((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))
......................))))))))))..))))))))..)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGT
ATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCA
dot-bracket secondary structure
).((((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))
......................))))))))))..))))))))..)))))))))).
SIMILARITIES| miRBase osa-MIR167h: 3.0E-5 PMRD vvi-miR167c: 3.0E-5 microPC miR167: 4.0E-35 | UniProt no hits RFAM 1MIR167_1: 0.0006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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