ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 5 bulges: 0 |
pre-miRNA
CTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
...(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
download this record
CTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
...(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))).)))..
SIMILARITIES| miRBase ptc-MIR162a: 1e-43 PMRD ptc-miRf10578-akr: 1e-43 microPC miR162: 4e-43 | UniProt no hits RFAM MIR162_2: 2e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
download this record
