ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
source: microPC, original name: miR159
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTC miRNA* GCTTTCTTCAGTCCACTCA mismatches: 4 bulges: 0 |
pre-miRNA
GAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGGAT
TCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))))
))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGGAT
TCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))))
))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..)))))
SIMILARITIES| miRBase ptc-MIR319a: 5e-29 PMRD ptc-miR319a: 5e-29 microPC miR319: 1e-94 | UniProt no hits RFAM MIR159: 8e-28 |
Identical with: miR319 from microPC (MNEST045333) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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