ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR472
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCCCTACTCCACCCATCCC miRNA* GGTGGGTGAGCGGGGAAGATA mismatches: 3 bulges: 1 |
pre-miRNA
GGGTGGGTGAGCGGGGAAGATAACTTTGGTTTTTGAGATATTACTTGTTATTTTCCCTACTCCACCCATCCC
dot-bracket secondary structure
(((((((((((..(((((((((((...(((..(......)..))).)))))))))))..)).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGTGGGTGAGCGGGGAAGATAACTTTGGTTTTTGAGATATTACTTGTTATTTTCCCTACTCCACCCATCCC
dot-bracket secondary structure
(((((((((((..(((((((((((...(((..(......)..))).)))))))))))..)).))))))))).
SIMILARITIES| miRBase ptc-MIR472a: 5e-33 PMRD ptc-miR472a: 5e-33 microPC miR472: 2e-35 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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