ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR171
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGAACCAATATCACT miRNA* TGGTATTGTTTCGGCTCATG mismatches: 3 bulges: 0 |
pre-miRNA
GTTTGGTATTGTTTCGGCTCATGTCGTTCACACAGATGTGAGCCGAACCAATATCACT
dot-bracket secondary structure
...((((((((.(((((((((((((.........))))))))))))).))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTTTGGTATTGTTTCGGCTCATGTCGTTCACACAGATGTGAGCCGAACCAATATCACT
dot-bracket secondary structure
...((((((((.(((((((((((((.........))))))))))))).))))))))..
SIMILARITIES| miRBase osa-MIR171h: 3e-27 PMRD osa-miR171h: 3e-27 microPC miR171: 3e-27 | UniProt no hits RFAM MIR171_2: 6e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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