ABOUT THIS RECORDspecies: Helianthus annuus
source: microPC, original name: miR156
Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACA miRNA* TGCTCTCTATGCTTCTG mismatches: 1 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
(((((((((((((((((..((.((..(((((((((.........))))))))))).))..))))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
(((((((((((((((((..((.((..(((((((((.........))))))))))).))..))))))))))).))))))
SIMILARITIES| miRBase ptc-MIR156i: 0.0000009 PMRD han-miR157a: 5e-39 microPC miR157: 5e-39 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST045574) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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