ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGATCCTGAGAACAGAGG mismatches: 2 bulges: 1 |
pre-miRNA
AGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAAATCAAAAAGATTGTATGTGG
CCAACGCACCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.((((.((((((((((.((((((.((((((((............(((..((....)).)))......((((((....(((.....))))))))).))
)))))))))))).)))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAAATCAAAAAGATTGTATGTGG
CCAACGCACCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.((((.((((((((((.((((((.((((((((............(((..((....)).)))......((((((....(((.....))))))))).))
)))))))))))).)))))))))))))).)))
SIMILARITIES| miRBase csi-MIR398: 2e-70 PMRD ghr-miR398: 0.00003 microPC miR398: 2e-70 | UniProt no hits RFAM MIR398: 0.0000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
