ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACGGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCCGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGA
dot-bracket secondary structure
(((((((((((((((((.((((...((((((..((((((((...........))))))))..)))).))..)))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGA
dot-bracket secondary structure
(((((((((((((((((.((((...((((((..((((((((...........))))))))..)))).))..)))).)))))))))))))))))
SIMILARITIES| miRBase pab-MIR396c: 7e-48 PMRD ptc-miRf11071-akr: 0.00002 microPC miR396: 7e-48 | UniProt no hits RFAM MIR396: 0.0003 |
Identical with: pab-MIR396c from miRBase (MNEST039381) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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