ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR482
source: microPC, original name: miR482
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCTCCCATT miRNA* TGGGAGAGTATGCAAGAAG mismatches: 1 bulges: 1 |
pre-miRNA
AGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATTCCTTCTTGCCTACTCCTCCCATT
dot-bracket secondary structure
.((((((((((((.((((((((((((((((...)))))....))))))))))).)))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATTCCTTCTTGCCTACTCCTCCCATT
dot-bracket secondary structure
.((((((((((((.((((((((((((((((...)))))....))))))))))).)))).))))))))
SIMILARITIES| miRBase ptc-MIR482: 4e-30 PMRD no hits microPC miR482: 2e-32 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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