ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((...(((....)))...(((((((.......))).))))........))))))).)))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCGATCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((...(((....)))...(((((((.......))).))))........))))))).)))).)))).))).
SIMILARITIES| miRBase ghr-MIR162a: 2e-29 PMRD ghr-miR162a: 2e-29 microPC miR162: 4e-46 | UniProt no hits RFAM MIR162_2: 6e-24 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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