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ABOUT THIS RECORD
ID:
MNEST046505
species:
Populus nigra
source:
microPC, original name:
miR408
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGC
miRNA*
CGGGGAACAGGCAGAGCATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GA
CGGGGAACAGGCAGAGCATG
GATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCA
TGCACTGCCTCTTCCCTGGC
dot-bracket secondary structure
..
(((((((.((((((.(((((
(.((((((((..(((((......))))).)))))))).)))
))).)))))).)))))))..
SIMILARITIES
miRBase
ptc-MIR408
:
6e-42
PMRD
ptc-miR408
:
6e-42
microPC
miR408
:
6e-42
UniProt
no hits
RFAM
MIR408: 1e-40
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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