ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR399
source: microPC, original name: miR399
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCGTCTCTCCTCTGGCAGA mismatches: 2 bulges: 0 |
pre-miRNA
CAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAG
TTGCCCTG
dot-bracket secondary structure
(((((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))..........))))))).)))))))
.)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAG
TTGCCCTG
dot-bracket secondary structure
(((((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))..........))))))).)))))))
.)))))))
SIMILARITIES| miRBase vvi-MIR399b: 0.00002 PMRD vvi-miR399b: 0.00002 microPC miR399: 1e-56 | UniProt no hits RFAM mir-399: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
