ABOUT THIS RECORDspecies: Solanum lycopersicum
source: microPC, original name: miR156
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTG mismatches: 0 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
(((((((((((((((((.((((((((.(((((.......(((.....))).......))))).)))..))))).))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
CAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
(((((((((((((((((.((((((((.(((((.......(((.....))).......))))).)))..))))).))))))))))).))))))
SIMILARITIES| miRBase sly-MIR156a: 3e-47 PMRD sly-miR156a: 3e-47 microPC miR157: 3e-47 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
