ABOUT THIS RECORDspecies: Cichorium intybus
source: microPC, original name: miR393
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGACCGCATTGATCC miRNA* ATCATGCGATCTCTTTGGA mismatches: 1 bulges: 1 |
pre-miRNA
TCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATTTTTTTATCCAAGCT
GATAATTTGGATCATGCGATCTCTTTGGA
dot-bracket secondary structure
((((((((((.(((((.(((((((.((((((...(((..((...(((.....)))....))..)))..((((.((....)).((.....)).))))...)
))))).)))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATTTTTTTATCCAAGCT
GATAATTTGGATCATGCGATCTCTTTGGA
dot-bracket secondary structure
((((((((((.(((((.(((((((.((((((...(((..((...(((.....)))....))..)))..((((.((....)).((.....)).))))...)
))))).)))))))))))).))))))))))
SIMILARITIES| miRBase ath-MIR393b: 0.0001 PMRD ath-miRf10187-akr: 0.0001 microPC miR393: 1e-44 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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