ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR400
source: microPC, original name: miR400
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGAGAGTATTATAAGTCAC miRNA* GACTTATAAAGATCTCATG mismatches: 3 bulges: 0 |
pre-miRNA
TATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATG
dot-bracket secondary structure
(((((((...(((((((((((..(.(((((.....(((.....)))..))))).)..)))))))))))...)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATG
dot-bracket secondary structure
(((((((...(((((((((((..(.(((((.....(((.....)))..))))).)..)))))))))))...)))))))
SIMILARITIES| miRBase ath-MIR400: 0.0000000000002 PMRD ath-miR400: 0.0000000000002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
