ABOUT THIS RECORDspecies: Paullinia cupana var. sorbilis
source: microPC, original name: miR164
Taxonomy by NCBI:
Paullinia cupana var. sorbilis Paullinia cupana Paullinia Sapindaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGC miRNA* ATGTGCCCCTCTTCCCCA mismatches: 5 bulges: 0 |
pre-miRNA
ATGGAGAAGCAGGGCACGTGCATTACTAACTCACCAACCATAAAAAACACTGACACATAAATTCAATTGATTGAGTTAGTTCTTCATGTGCCCCTCTTCCC
CA
dot-bracket secondary structure
).((.((((..(((((((((....(((((((((.(((.............................)))..)))))))))....)))))))))..)))).)
).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGGAGAAGCAGGGCACGTGCATTACTAACTCACCAACCATAAAAAACACTGACACATAAATTCAATTGATTGAGTTAGTTCTTCATGTGCCCCTCTTCCC
CA
dot-bracket secondary structure
).((.((((..(((((((((....(((((((((.(((.............................)))..)))))))))....)))))))))..)))).)
).
SIMILARITIES| miRBase mtr-MIR164b: 1.0E-12 PMRD mtr-miR164b: 1.0E-12 microPC miR164: 4.0E-53 | UniProt no hits RFAM 4MIR164: 2.0E-11 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
