miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST046569
species: Manihot esculenta
source: microPC, original name: miR172

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCA

miRNA*
 CGTCACCATCAAGATTCAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTTT
CGTATGAGAATCTTGATGATGCTGCA

dot-bracket secondary structure
.(((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((...)))))).
.)))...))))))))))).)).))).


SIMILARITIES
miRBase ath-MIR172c: 0.0000004

PMRD mes-miR172: 2e-67

microPC miR172: 2e-67		UniProt no hits

RFAM mir-172: 0.000007

Identical with: mes-miR172 from PMRD (MNEST048693)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record




Liczniki na strone;