ABOUT THIS RECORDspecies: Populus trichocarpa
source: microPC, original name: miR171
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGCCGAATCAATATCACT miRNA* TGATATTGGTCCGGCTCATC mismatches: 3 bulges: 0 |
pre-miRNA
GTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGAATCAATATCACT
dot-bracket secondary structure
(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGAATCAATATCACT
dot-bracket secondary structure
(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).
SIMILARITIES| miRBase ptc-MIR479: 4e-40 PMRD ptc-miR479: 4e-40 microPC miR171: 4e-40 | UniProt no hits RFAM MIR171_2: 6e-39 |
Identical with: ptc-MIR479 from miRBase (MNEST041499) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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