ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACGCCGGGTCCGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GGGGAATGACGCCGGGTCCGAAAGAGAGACGCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((.(((.(((((((((..........(((((.(((....))).)))))))))))))).))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGACGCCGGGTCCGAAAGAGAGACGCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((.(((.(((((((((..........(((((.(((....))).)))))))))))))).))).)))))))))
SIMILARITIES| miRBase hvu-MIR166c: 1e-33 PMRD hvv-miR166: 1e-33 microPC miR166: 5e-39 | UniProt no hits RFAM mir-166: 1e-37 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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