ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGTCAATAT miRNA* ATTGGCCTGGTTCATTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATAT
dot-bracket secondary structure
((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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ATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATAT
dot-bracket secondary structure
((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))
SIMILARITIES| miRBase bna-MIR171g: 0.0000002 PMRD bna-miR171g: 0.0000002 microPC miR171: 9e-41 | UniProt no hits RFAM MIR171_1: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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