ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCCGGCAGCTTCA mismatches: 2 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCA
dot-bracket secondary structure
.(((((((((.(.(((((((((..((...........))..)))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCA
dot-bracket secondary structure
.(((((((((.(.(((((((((..((...........))..)))))))))).))))))))).
SIMILARITIES| miRBase osa-MIR167g: 1e-29 PMRD osa-miRf10478-akr: 1e-29 microPC miR167: 1e-29 | UniProt no hits RFAM MIR167_1: 3e-28 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
