miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST046587
species: Ipomoea nil
miRNA family: MIR319
source: microPC, original name: miR319

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCCT

miRNA*
 AGAGCTTTCTTCAGTCCAAAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGATGAACCCGGCCT
TGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCT

dot-bracket secondary structure
((.(((((..(((((((((((..(((((.(((..((((((((((((.(((((((..(((((((..((..(((((((((.((....((.......))...(
(.((.....)).))..)))))))))))..))..)))))))..)))))).).)))))))))))).))).)))))..)))))))))))..))))).))


SIMILARITIES
miRBase rco-MIR319a: 5e-29

PMRD ptc-miR319a: 1e-26

microPC miR319: 9e-108		UniProt no hits

RFAM MIR159: 1e-27

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;