ABOUT THIS RECORDspecies: Helianthus annuus
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
ATGACAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((..((.((..(((((((((.........))))))))))).))..))))))))))).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGACAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((..((.((..(((((((((.........))))))))))).))..))))))))))).)))))))).
SIMILARITIES| miRBase aqc-MIR156b: 2.0E-8 PMRD han-miR157a: 2.0E-42 microPC miR157: 2.0E-42 | UniProt no hits RFAM no hits |
Identical with: han-miR157a from PMRD (MNEST048642), miR156 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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