ABOUT THIS RECORDspecies: Lactuca serriola
source: microPC, original name: miR169
Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCC miRNA* CAGTCTTCTTGGCTA mismatches: 0 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.(((((..(((.(((..((((((.(((..........)))))))))..)))..)))...)))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.(((((..(((.(((..((((((.(((..........)))))))))..)))..)))...)))))))))))))))))))
SIMILARITIES| miRBase ath-MIR169m: 0.000001 PMRD ath-miR169m: 0.000001 microPC miR169: 7e-48 | UniProt no hits RFAM MIR169_5: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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